WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028480 Gene Name  Cbr-lpr-2
Sequence Name  ? CBG06168 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable retinoid binding activity and retinol transmembrane transporter activity. Is an ortholog of C. elegans lpr-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06168a.1 CBG06168a.1   [unknown]
Transcript:CBG06168b.3 CBG06168b.3   [unknown]
Transcript:CBG06168b.4 CBG06168b.4   [unknown]
Transcript:CBG06168b.1 CBG06168b.1   [unknown]
Transcript:CBG06168b.2 CBG06168b.2   [unknown]
Transcript:CBG06168c.1 CBG06168c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06168b CBG06168b   [unknown]
CDS:CBG06168a CBG06168a   [unknown]
CDS:CBG06168c CBG06168c   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00111279

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lpr-2, AGAAATCTTCACATCCGGGCGGATATCGGTGACGGATGAACGATTATTATTGTTAAAGAT, WBGene00028480   Expr1055330 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region