WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028294 Gene Name  Cbr-itr-1
Sequence Name  ? CBG05938 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable inositol 1,4,5 trisphosphate binding activity and inositol 1,4,5-trisphosphate-gated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of C. elegans itr-1. In C. elegans, itr-1 is involved in several processes, including determination of adult lifespan; mating behavior; and system process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05938a.1 CBG05938a.1   [unknown]
Transcript:CBG05938b.1 CBG05938b.1   [unknown]
Transcript:CBG05938c.1 CBG05938c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05938c CBG05938c   [unknown]
CDS:CBG05938a CBG05938a   [unknown]
CDS:CBG05938b CBG05938b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-itr-1, GCTCAATGTGTGAAGGAGCGAAATTTGGATTGGTTCCCAAGAATGCAAGCTCTATCCCTT, WBGene00028294   Expr1050563 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

10 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  located_in

0 Homologues

0 Locations

10 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region