WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028154 Gene Name  Cbr-deb-1
Sequence Name  ? CBG05763 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable actin filament binding activity. Predicted to be involved in cell adhesion. Is an ortholog of C. elegans deb-1. In C. elegans, deb-1 is involved in positive regulation of ovulation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05763b.1 CBG05763b.1   [unknown]
Transcript:CBG05763a.1 CBG05763a.1   [unknown]
Transcript:CBG05763d.1 CBG05763d.1   [unknown]
Transcript:CBG05763c.1 CBG05763c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05763b CBG05763b   [unknown]
CDS:CBG05763a CBG05763a   [unknown]
CDS:CBG05763d CBG05763d   [unknown]
CDS:CBG05763c CBG05763c   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00110982
WBVar00110980
WBVar00110981
WBVar00110971
WBVar00110972
WBVar00110970
WBVar00110975
WBVar00110976
WBVar00110973
WBVar00110974
WBVar00110979
WBVar00110977
WBVar00110978
WBVar00110968
WBVar00110969
WBVar00110967

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-deb-1, AACAGTTGGTTCATAATGCTCAAAACTTGATGCAATCTGTAAAGGATGTCGTCCGTGCCG, WBGene00028154   Expr1068571 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region