WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028077 Gene Name  Cbr-kcnl-1
Sequence Name  ? CBG05673 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans kcnl-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05673a.1 CBG05673a.1   [unknown]
Transcript:CBG05673c.1 CBG05673c.1   [unknown]
Transcript:CBG05673b.1 CBG05673b.1   [unknown]
Transcript:CBG05673e.1 CBG05673e.1   [unknown]
Transcript:CBG05673d.1 CBG05673d.1   [unknown]
Transcript:CBG05673g.1 CBG05673g.1   [unknown]
Transcript:CBG05673f.1 CBG05673f.1   [unknown]
Transcript:CBG05673h.1 CBG05673h.1   [unknown]
 

Other

8 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05673f CBG05673f   [unknown]
CDS:CBG05673e CBG05673e   [unknown]
CDS:CBG05673h CBG05673h   [unknown]
CDS:CBG05673g CBG05673g   [unknown]
CDS:CBG05673b CBG05673b   [unknown]
CDS:CBG05673a CBG05673a   [unknown]
CDS:CBG05673d CBG05673d   [unknown]
CDS:CBG05673c CBG05673c   [unknown]

0 RNAi Result

48 Allele

Public Name
WBVar00005897
WBVar00005887
WBVar00005892
WBVar00005952
WBVar00005942
WBVar00005947
WBVar00005932
WBVar00005937
WBVar00005922
WBVar00005927
WBVar00005912
WBVar00005917
WBVar00005902
WBVar00005907
WBVar00005787
WBVar00005792
WBVar00005797
WBVar00005782
WBVar00005832
WBVar00005837
WBVar00005822
WBVar00005827
WBVar00005812
WBVar00005817
WBVar00005802
WBVar00005807
WBVar00005877
WBVar00005882
WBVar00005867
WBVar00005872

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

0 Expression Patterns

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region