WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027971 Gene Name  Cbr-hif-1
Sequence Name  ? CBG05540 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans hif-1. In C. elegans, hif-1 is involved in several processes, including determination of adult lifespan; positive regulation of transcription by RNA polymerase II; and response to stress. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05540.1 CBG05540.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05540 CBG05540   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00040304
WBVar00005427
WBVar00005432
WBVar00005422
WBVar00110653
WBVar00110656
WBVar00110654
WBVar00110655
WBVar00011979
WBVar00011984

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hif-1, ACGAATGCACATGAGTGGTCCCTCCGATATGGACTACAATATGTACAATAATCAGTATCA, WBGene00027971   Expr1066747 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region