WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027908 Gene Name  Cbr-smg-3
Sequence Name  ? CBG05463 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Is an ortholog of C. elegans smg-3. In C. elegans, smg-3 is involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05463a.1 CBG05463a.1   [unknown]
Transcript:CBG05463b.1 CBG05463b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05463a CBG05463a   [unknown]
CDS:CBG05463b CBG05463b   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00044284
WBVar00044279
WBVar00044294
WBVar00044289
WBVar00110620
WBVar00110618
WBVar00110619
WBVar00015344

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-smg-3, TGCGTCTGATGGTTCCCAAGGATCTTTACAAAGAATCAGAGCAGCGGACGCTTAGCAAAG, WBGene00027908   Expr1050545 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region