WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027817 Gene Name  Cbr-ama-1
Sequence Name  ? CBG05355 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity and DNA-directed RNA polymerase activity. Predicted to be involved in transcription by RNA polymerase II. Is an ortholog of C. elegans ama-1. In C. elegans, ama-1 is involved in embryo development; gastrulation; and mRNA transcription by RNA polymerase II. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05355a.1 CBG05355a.1   [unknown]
Transcript:CBG05355b.1 CBG05355b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05355b CBG05355b   [unknown]
CDS:CBG05355a CBG05355a   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00110410
WBVar00110411
WBVar00110414
WBVar00110415
WBVar00110412
WBVar00110413
WBVar00110418
WBVar00110419
WBVar00110416
WBVar00110417
WBVar00110421
WBVar00110422
WBVar00110420
WBVar00110425
WBVar00110426
WBVar00110423
WBVar00110424
WBVar00110427

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rpb-1, CTCTCCATCGAGCCCAAGATACTCGCCAACGTCACCGACGTATAGTCCAACAAGTCCAAC, WBGene00027817   Expr1055463 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  enables
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region