Genomics
3 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:CBG04739a.1 | CBG04739a.1 | [unknown] | |
| Transcript:CBG04739b.1 | CBG04739b.1 | [unknown] | |
| Transcript:CBG04739c.1 | CBG04739c.1 | [unknown] |
Other
3 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:CBG04739c | CBG04739c | [unknown] | |
| CDS:CBG04739b | CBG04739b | [unknown] | |
| CDS:CBG04739a | CBG04739a | [unknown] |
20 Allele
| Public Name |
|---|
| WBVar00136304 |
| WBVar00109637 |
| WBVar00109636 |
| WBVar00109639 |
| WBVar00109638 |
| WBVar00109640 |
| WBVar00109641 |
| WBVar00109642 |
| WBVar00109643 |
| WBVar00109644 |
| WBVar00109645 |
| WBVar00109646 |
| WBVar00109647 |
| WBVar00109648 |
| WBVar00109650 |
| WBVar00109651 |
| WBVar00109649 |
| WBVar00109635 |
| WBVar00020649 |
| WBVar00020654 |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day9_vs_Day6_upregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day1_downregulated |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| CBG04739, GAATTCGCGAAAGCGTTCCAATGCCCCATTGGATCTCCAATGAATCCAGAGAGAAAGTGC, WBGene00027355 | Expr1052754 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG04738, AATTTCCACGTGTCAGCGTCCAATCGAGACATGCTCATCTACCTCATCATTTATCAATAA, WBGene00027354 | Expr1067993 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |
