WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027166 Gene Name  Cbr-daf-12
Sequence Name  ? CBG04512 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans daf-12. In C. elegans, daf-12 is involved in several processes, including determination of adult lifespan; heat acclimation; and positive regulation of dauer larval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04512b.1 CBG04512b.1   [unknown]
Transcript:CBG04512a.1 CBG04512a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04512b CBG04512b   [unknown]
CDS:CBG04512a CBG04512a   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00109443
WBVar00109444
WBVar00109445
WBVar00109446
WBVar00109447
WBVar00109448
WBVar00109449
WBVar00109441
WBVar00109442
WBVar00109454
WBVar00109455
WBVar00109456
WBVar00109457
WBVar00109458
WBVar00109459
WBVar00109450
WBVar00109451
WBVar00109452
WBVar00109453
WBVar00109465
WBVar00109466
WBVar00109467
WBVar00109468
WBVar00109469
WBVar00109460
WBVar00109461
WBVar00109462
WBVar00109463
WBVar00109464

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-daf-12, CGCACACCAACTCGTTCAAAACTCCAACCATCAAGGGACAGAACGTTTCAGTCAATGTGG, WBGene00027166   Expr1053052 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region