WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027163 Gene Name  Cbr-abl-1
Sequence Name  ? CBG04507 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans abl-1. In C. elegans, abl-1 is involved in several processes, including defense response to other organism; negative regulation of DNA damage response, signal transduction by p53 class mediator; and negative regulation of engulfment of apoptotic cell. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04507b.1 CBG04507b.1   [unknown]
Transcript:CBG04507a.1 CBG04507a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04507b CBG04507b   [unknown]
CDS:CBG04507a CBG04507a   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00109425
WBVar00109426
WBVar00109427
WBVar00109428
WBVar00109432
WBVar00109433
WBVar00109434
WBVar00109435
WBVar00109436
WBVar00109437
WBVar00109438
WBVar00109439
WBVar00109430
WBVar00109431
WBVar00109429
WBVar00109440

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG27575, CTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTT, WBGene00088989   Expr1060943 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-abl-1, AACCAGTTGATGGAAAATTGGTGATGGCGTTCCAAGACTGTTTCGATCAAATCATGCGTC, WBGene00027163   Expr1050746 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region