WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027073 Gene Name  Cbr-unc-43
Sequence Name  ? CBG04391 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; calcium/calmodulin-dependent protein kinase activity; and calmodulin binding activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans unc-43. In C. elegans, unc-43 is involved in MAPK cascade; medium-term memory; and positive regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04391b.1 CBG04391b.1   [unknown]
Transcript:CBG04391a.1 CBG04391a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04391b CBG04391b   [unknown]
CDS:CBG04391a CBG04391a   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00002567
WBVar00002572
WBVar00002557
WBVar00002562
WBVar00002542
WBVar00002547
WBVar00002552
WBVar00002532
WBVar00002537
WBVar00002522
WBVar00002527

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-43, AGAGGCTAAGAGCCTTATCGACAGCATGCTGACTGTCAACCCAAAGAAGCGTATCACTGC, WBGene00027073   Expr1057185 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG04392, CTATGAATCCGCCACCACGTCTTCTCACACTTCAAGCACTACTAAAAAGATCGCCAACGC, WBGene00027074   Expr1052101 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region