WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027000 Gene Name  Cbr-tsn-1
Sequence Name  ? CBG04292 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulatory ncRNA-mediated gene silencing. Predicted to be part of RNAi effector complex. Is an ortholog of C. elegans tsn-1. In C. elegans, tsn-1 is involved in miRNA-mediated post-transcriptional gene silencing. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04292.1 CBG04292.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04292 CBG04292   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00109157
WBVar00109158
WBVar00109159
WBVar00109168
WBVar00109169
WBVar00109160
WBVar00109161
WBVar00109162
WBVar00109163
WBVar00109164
WBVar00109165
WBVar00109166
WBVar00109167
WBVar00109171
WBVar00109170

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tsn-1, GTACAAGTCTGCCGAGGATAAGGCTCGCAAGAGCAGAAAGAACATCTGGGAGTACGGAGA, WBGene00027000   Expr1069781 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region