WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026875 Gene Name  Cbr-tmc-1
Sequence Name  ? CBG04140 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in plasma membrane. Is an ortholog of C. elegans tmc-1. In C. elegans, tmc-1 is involved in detection of stimulus involved in sensory perception; monoatomic ion transmembrane transport; and sensory perception of chemical stimulus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04140d.1 CBG04140d.1   [unknown]
Transcript:CBG04140b.1 CBG04140b.1   [unknown]
Transcript:CBG04140c.1 CBG04140c.1   [unknown]
Transcript:CBG04140a.1 CBG04140a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04140a CBG04140a   [unknown]
CDS:CBG04140b CBG04140b   [unknown]
CDS:CBG04140c CBG04140c   [unknown]
CDS:CBG04140d CBG04140d   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00109027
WBVar00109028

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04140, AGAGGAGACAGAATTGCCGGAGTCTTCGAAGAAAAGATTCAGAATATCCGTCTCACCAAC, WBGene00026875   Expr1070247 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG04138, ACATTCTTGCGTTGGATCGTTTTTGTCAACATAATGATCACTTTGATAGCTGTTGCATTT, WBGene00026873   Expr1063331 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  located_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region