WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026641 Gene Name  Cbr-scpl-1
Sequence Name  ? CBG03870 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable phosphatase activity. Is an ortholog of C. elegans scpl-1. In C. elegans, scpl-1 is involved in regulation of egg-laying behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03870c.1 CBG03870c.1   [unknown]
Transcript:CBG03870b.1 CBG03870b.1   [unknown]
Transcript:CBG03870a.1 CBG03870a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03870b CBG03870b   [unknown]
CDS:CBG03870c CBG03870c   [unknown]
CDS:CBG03870a CBG03870a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00108791
WBVar00108790
WBVar00017759

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-scpl-1, GTTTGATGATCCAGCCGATACGGAGTTATTAGACATTCTGCCCACTTTGGAGCATCTGAA, WBGene00026641   Expr1068071 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region