WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026572 Gene Name  Cbr-ercc-1
Sequence Name  ? CBG03787 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA repair. Predicted to be located in nucleus. Is an ortholog of C. elegans ercc-1. In C. elegans, ercc-1 is involved in UV-damage excision repair and base-excision repair. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03787c.1 CBG03787c.1   [unknown]
Transcript:CBG03787b.1 CBG03787b.1   [unknown]
Transcript:CBG03787b.2 CBG03787b.2   [unknown]
Transcript:CBG03787a.1 CBG03787a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03787c CBG03787c   [unknown]
CDS:CBG03787b CBG03787b   [unknown]
CDS:CBG03787a CBG03787a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ercc-1, ACTTCTCTACCACTTCGGCACGCTTCAAGAAATTTCAACAGCTTCAGAAACTGCAATTTC, WBGene00026572   Expr1056931 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region