WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026468 Gene Name  Cbr-gtf-2F1
Sequence Name  ? CBG03654 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription elongation by RNA polymerase II and transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Is an ortholog of C. elegans gtf-2F1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03654.1 CBG03654.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03654 CBG03654   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00108672
WBVar00108671
WBVar00108670
WBVar00108669

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03654, AAGAAGAATGTGAAGCCGGCGAAGGAGAAGCGACAGAGAGTCGAGAATAGTGACGATGTG, WBGene00026468   Expr1069613 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region