WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026441 Gene Name  Cbr-tir-1
Sequence Name  ? CBG03611 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable NAD+ nucleosidase activity and signaling adaptor activity. Predicted to be involved in negative regulation of MyD88-independent toll-like receptor signaling pathway; response to axon injury; and signal transduction. Is an ortholog of C. elegans tir-1. In C. elegans, tir-1 is involved in several processes, including NAD catabolic process; defense response to other organism; and regulation of gene expression. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03611c.1 CBG03611c.1   [unknown]
Transcript:CBG03611d.1 CBG03611d.1   [unknown]
Transcript:CBG03611a.1 CBG03611a.1   [unknown]
Transcript:CBG03611b.1 CBG03611b.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03611d CBG03611d   [unknown]
CDS:CBG03611c CBG03611c   [unknown]
CDS:CBG03611b CBG03611b   [unknown]
CDS:CBG03611a CBG03611a   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00136045
WBVar00108496
WBVar00108495
WBVar00108494
WBVar00108493
WBVar00108492
WBVar00108499
WBVar00108498
WBVar00108497

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03605, TGATGGGTGAAGAAATACTAACGGAACGAAATCAACTATCCCGACAAGATGCGTCGTGCT, WBGene00026438   Expr1059353 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-tir-1, TCACAAAGTACAATGGTGTTAAATGGGTCCACGACTACCAAGACGCCTGTATGCAGAAGG, WBGene00026441   Expr1053951 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG03609, TTGTCTGGCGACCTGTACGCTGGCAAGTGTCAAAGAATTCGAACCAGCTGTTATCAAAAC, WBGene00026440   Expr1054627 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region