WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026277 Gene Name  Cbr-tsp-12
Sequence Name  ? CBG03409 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans tsp-12. In C. elegans, tsp-12 is involved in several processes, including nematode male tail tip morphogenesis; positive regulation of egg-laying behavior; and regulation of developmental process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03409b.1 CBG03409b.1   [unknown]
Transcript:CBG03409a.1 CBG03409a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03409b CBG03409b   [unknown]
CDS:CBG03409a CBG03409a   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00108328
WBVar00108327
WBVar00108331
WBVar00108330
WBVar00108337
WBVar00108336
WBVar00108335
WBVar00108334
WBVar00108333
WBVar00108332
WBVar00108329

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tsp-12, GTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAA, WBGene00026277   Expr1060254 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region