WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025942 Gene Name  Cbr-ptp-3
Sequence Name  ? CBG02994 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Is an ortholog of C. elegans ptp-3. In C. elegans, ptp-3 is involved in several processes, including embryonic morphogenesis; nervous system development; and neuroblast migration. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02994f.1 CBG02994f.1   [unknown]
Transcript:CBG02994e.1 CBG02994e.1   [unknown]
Transcript:CBG02994d.1 CBG02994d.1   [unknown]
Transcript:CBG02994c.1 CBG02994c.1   [unknown]
Transcript:CBG02994b.1 CBG02994b.1   [unknown]
Transcript:CBG02994a.1 CBG02994a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02994a CBG02994a   [unknown]
CDS:CBG02994b CBG02994b   [unknown]
CDS:CBG02994c CBG02994c   [unknown]
CDS:CBG02994d CBG02994d   [unknown]
CDS:CBG02994e CBG02994e   [unknown]
CDS:CBG02994f CBG02994f   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00107963
WBVar00107962
WBVar00107961
WBVar00107960
WBVar00107959
WBVar00107958
WBVar00107957

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ptp-3, ACGACAAAATATGATTCAAGAACCTGACCAATACCACTTCCTGTATCAGGCGGCATACGA, WBGene00025942   Expr1056279 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02996, ACAGCGTAGCACCCGGATGGAAGTATCACGTATCGAACACAGGATCTGTAAAGCAAACCT, WBGene00025943   Expr1066904 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region