WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025929 Gene Name  Cbr-unc-53
Sequence Name  ? CBG02975 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in neurogenesis. Is an ortholog of C. elegans unc-53. In C. elegans, unc-53 is involved in several processes, including backward locomotion; positive regulation of locomotion; and reproductive behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02975b.1 CBG02975b.1   [unknown]
Transcript:CBG02975c.1 CBG02975c.1   [unknown]
Transcript:CBG02975a.1 CBG02975a.1   [unknown]
Transcript:CBG02975e.1 CBG02975e.1   [unknown]
Transcript:CBG02975d.1 CBG02975d.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02975a CBG02975a   [unknown]
CDS:CBG02975b CBG02975b   [unknown]
CDS:CBG02975c CBG02975c   [unknown]
CDS:CBG02975d CBG02975d   [unknown]
CDS:CBG02975e CBG02975e   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00107943
WBVar00107951
WBVar00107950
WBVar00107949
WBVar00107948
WBVar00107947
WBVar00107946
WBVar00107945
WBVar00107944

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-53, GAAGACCCAACTGACATTGTCACCGAAAAATGGCCATGGTTCGATGGTCCAAATCCAGAA, WBGene00025929   Expr1055055 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region