WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025464 Gene Name  Cbr-clr-1
Sequence Name  ? CBG02405 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Is an ortholog of C. elegans clr-1. In C. elegans, clr-1 is involved in several processes, including negative regulation of fibroblast growth factor receptor signaling pathway; netrin-activated signaling pathway; and positive regulation of synapse assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02405a.1 CBG02405a.1   [unknown]
Transcript:CBG02405b.1 CBG02405b.1   [unknown]
Transcript:CBG02405c.1 CBG02405c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02405c CBG02405c   [unknown]
CDS:CBG02405a CBG02405a   [unknown]
CDS:CBG02405b CBG02405b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00107341
WBVar00107340
WBVar00107347
WBVar00107346
WBVar00107345
WBVar00107344
WBVar00107343
WBVar00107342
WBVar00107339
WBVar00107338
WBVar00107337
WBVar00107336
WBVar00107335
WBVar00107334

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-clr-1, GCTGAGCAACGGATAGACATCTTCCAAACCGTTAAAGGCCTTCAATCACATAGACCGATG, WBGene00025464   Expr1051190 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region