WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025434 Gene Name  Cbr-vhp-1
Sequence Name  ? CBG02372 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable MAP kinase tyrosine/serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Is an ortholog of C. elegans vhp-1. In C. elegans, vhp-1 is involved in several processes, including negative regulation of MAPK cascade; regulation of defense response to bacterium; and regulation of protein localization to nucleus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02372a.1 CBG02372a.1   [unknown]
Transcript:CBG02372b.1 CBG02372b.1   [unknown]
Transcript:CBG02372c.1 CBG02372c.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02372a CBG02372a   [unknown]
CDS:CBG02372c CBG02372c   [unknown]
CDS:CBG02372b CBG02372b   [unknown]

0 RNAi Result

2 Allele

Public Name
WBVar00107305
WBVar00107306

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-vhp-1, GCTTTGATGCTCCAGAAACGAATGTTCCATCTACTCCAATTCTTAACTTCACCAATCCAT, WBGene00025434   Expr1061331 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region