WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025248 Gene Name  Cbr-hum-6
Sequence Name  ? CBG02140 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be located in cytoskeleton. Predicted to be part of myosin complex. Is an ortholog of C. elegans hum-6. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02140.1 CBG02140.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02140 CBG02140   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00135943
WBVar00135944
WBVar00135945
WBVar00135946
WBVar00135947
WBVar00135948
WBVar00135949
WBVar00135950
WBVar00135951
WBVar00135952
WBVar00135953
WBVar00135954

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hum-6, ATATGTTGAAGGGTAATGAAGGAAAGAAGCTGCTTCTGGATACTACTGTGGTACGACACT, WBGene00025248   Expr1050324 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in
  part_of

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region