Genomics
7 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:CBG02059f.1 | CBG02059f.1 | [unknown] | |
| Transcript:CBG02059g.1 | CBG02059g.1 | [unknown] | |
| Transcript:CBG02059e.1 | CBG02059e.1 | [unknown] | |
| Transcript:CBG02059d.1 | CBG02059d.1 | [unknown] | |
| Transcript:CBG02059c.1 | CBG02059c.1 | [unknown] | |
| Transcript:CBG02059b.1 | CBG02059b.1 | [unknown] | |
| Transcript:CBG02059a.1 | CBG02059a.1 | [unknown] |
Other
7 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:CBG02059f | CBG02059f | [unknown] | |
| CDS:CBG02059g | CBG02059g | [unknown] | |
| CDS:CBG02059b | CBG02059b | [unknown] | |
| CDS:CBG02059c | CBG02059c | [unknown] | |
| CDS:CBG02059d | CBG02059d | [unknown] | |
| CDS:CBG02059e | CBG02059e | [unknown] | |
| CDS:CBG02059a | CBG02059a | [unknown] |
23 Allele
| Public Name |
|---|
| WBVar00141700 |
| WBVar00141696 |
| WBVar00141697 |
| WBVar00141698 |
| WBVar00141699 |
| WBVar00141692 |
| WBVar00141693 |
| WBVar00141694 |
| WBVar00141695 |
| WBVar00141689 |
| WBVar00141690 |
| WBVar00141691 |
| WBVar00106956 |
| WBVar00106957 |
| WBVar00106954 |
| WBVar00106955 |
| WBVar00054314 |
| WBVar00054319 |
| WBVar00054304 |
| WBVar00054309 |
| WBVar00054299 |
| WBVar00022514 |
| WBVar00022519 |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day9_vs_Day6_upregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day1_downregulated |
4 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| CBG02060, TTCGAGAAGCCCAATATACTCGGATGATTCTAGTGTCGCTGAAAGTTATAGACGGGAAAG, WBGene00025195 | Expr1067891 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG02054, TGTCAGCGATCATAAGACATGTGCACTGTTGATGACGAGGATGAAAGAGGCAAGTAGACA, WBGene00025192 | Expr1055717 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| Cbr-unc-2, GCCTAGCGTACAAACATCTGATTCGAATGAACATGCCTGTTGCTGAAGATGGAACAGTTC, WBGene00025194 | Expr1064885 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG02056, CGATTGCCGCATCAGAAATCATACCATCCCCGATACAGCCGCGAAAAATTTCCATCAATG, WBGene00025193 | Expr1063989 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |
9 GO Annotation
| Annotation Extension | Qualifier |
|---|---|
| involved_in | |
| involved_in | |
| involved_in | |
| located_in | |
| located_in | |
| part_of | |
| enables | |
| enables | |
| enables |
