WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025071 Gene Name  Cbr-ipla-2
Sequence Name  ? CBG01902 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in lipid metabolic process. Is an ortholog of C. elegans ipla-2. In C. elegans, ipla-2 is involved in intestinal lipid catabolic process and response to starvation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01902.1 CBG01902.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01902 CBG01902   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00135860
WBVar00135861
WBVar00135862
WBVar00135863
WBVar00135864
WBVar00135865
WBVar00135866
WBVar00135867
WBVar00135868
WBVar00135869
WBVar00054049
WBVar00054044
WBVar00054054
WBVar00054059
WBVar00069986
WBVar00069991

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01902, GTGAGACTTCTCAAATTCGACGACGCCCATCCATACCAAAAATCTCCATTTGCAGAACTT, WBGene00025071   Expr1060415 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region