WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024985 Gene Name  Cbr-unc-26
Sequence Name  ? CBG01799 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Is an ortholog of C. elegans unc-26. In C. elegans, unc-26 is involved in several processes, including nitrogen compound transport; regulation of locomotion; and synaptic vesicle endocytosis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01799b.1 CBG01799b.1   [unknown]
Transcript:CBG01799a.1 CBG01799a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01799a CBG01799a   [unknown]
CDS:CBG01799b CBG01799b   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-26, ATGTTATATTTTGGTTTGGAGACTTCAATTATCGTATCAGTTTGTCGGGAGAAGAAGTGA, WBGene00024985   Expr1053509 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region