WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024303 Gene Name  Cbr-dtmk-1
Sequence Name  ? CBG01006 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and dTMP kinase activity. Predicted to be involved in dTDP biosynthetic process. Is an ortholog of C. elegans dtmk-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01006.1 CBG01006.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01006 CBG01006   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00141513
WBVar00141511
WBVar00141512
WBVar00066106
WBVar00066076
WBVar00066111
WBVar00066081
WBVar00066116
WBVar00066086
WBVar00066121
WBVar00066091
WBVar00066096
WBVar00066101
WBVar00066072

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01006, GTGTTCCAGTTGTACACGGAGTTGGATCGCAGCAAGCCACTGGAGGTCTTGGAGAAGATT, WBGene00024303   Expr1064972 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region