WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024236 Gene Name  Cbr-sec-5
Sequence Name  ? CBG00928 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in Golgi to plasma membrane transport. Predicted to be part of exocyst. Is an ortholog of C. elegans sec-5. In C. elegans, sec-5 is involved in vesicle tethering involved in exocytosis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00928.1 CBG00928.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00928 CBG00928   [unknown]

0 RNAi Result

203 Allele

Public Name
WBVar00135665
WBVar00135666
WBVar00135667
WBVar00135668
WBVar00135669
WBVar00135670
WBVar00135671
WBVar00135672
WBVar00042572
WBVar00042537
WBVar00042532
WBVar00042542
WBVar00042502
WBVar00042517
WBVar00042512
WBVar00042527
WBVar00042522
WBVar00042452
WBVar00042457
WBVar00042462
WBVar00042467
WBVar00042472
WBVar00042477
WBVar00042492
WBVar00042487
WBVar00042417
WBVar00042412
WBVar00042427
WBVar00042422
WBVar00042437

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG00934, GCTCATTATACCAGGGACCGCCCATGAAAATGGTCGGATTTTCAGAAGTCTGGATTTTGG, WBGene00024242   Expr1068043 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-sec-5, CTAGAAGAGGCATTGTCCAGCTATGCCACGCTGGCGATTCGAGTTCAGATTAATAGCTAT, WBGene00024236   Expr1050001 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region