WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024188 Gene Name  Cbr-pax-3
Sequence Name  ? CBG00861 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans pax-3. In C. elegans, pax-3 is involved in epidermal cell fate specification; gonad morphogenesis; and hemidesmosome assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00861a.1 CBG00861a.1   [unknown]
Transcript:CBG00861b.1 CBG00861b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00861b CBG00861b   [unknown]
CDS:CBG00861a CBG00861a   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00064698
WBVar00064638
WBVar00064703
WBVar00064643
WBVar00064708
WBVar00064648
WBVar00064713
WBVar00064653
WBVar00064718
WBVar00064593
WBVar00064658
WBVar00064598
WBVar00064663
WBVar00064603
WBVar00064668
WBVar00064608
WBVar00064673
WBVar00064613
WBVar00064678
WBVar00064618
WBVar00064683
WBVar00064623
WBVar00064688
WBVar00064628
WBVar00064693
WBVar00064633

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pax-3, GACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCG, WBGene00024188   Expr1050559 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region