WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023636 Gene Name  Cbr-ajm-1
Sequence Name  ? CBG00187 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in cell-cell junction organization. Is an ortholog of C. elegans ajm-1. In C. elegans, ajm-1 is involved in cell-cell junction organization and embryo development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00187.1 CBG00187.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00187 CBG00187   [unknown]

0 RNAi Result

5 Allele

Public Name
WBVar00059974
WBVar00059964
WBVar00059969
WBVar00059959
WBVar00059954

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

4 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG00188, ATCGTGACCAAGAGGAAGAACTGGTTTTCAACGAGGAGCGCCGCAAAACAGTGACCATGT, WBGene00023637   Expr1063155 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG00190, GTGGAAGAAGGAGTTTTTGTTCAGGTGAGAGAAATTCATATTCCGAATTGTTCTGGGTTC, WBGene00023639   Expr1054564 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG00189, CACGTCGGAAACAAAGCCAGAAGGAGATGTTGAAGAGCCTGATTATGCCCTAGTACCAGC, WBGene00023638   Expr1060182 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-ajm-1, TGAAAGTGCGCGAGGATGAGCTAGCTCAAGGATATATGTCGAAAGTTGCCAGAGAGGGAT, WBGene00023636   Expr1067210 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  involved_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region