WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023607 Gene Name  Cbr-lin-2
Sequence Name  ? CBG00133 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and protein tyrosine kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans lin-2. In C. elegans, lin-2 is involved in several processes, including egg-laying behavior; positive regulation of vulval development; and protein localization to membrane. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00133a.1 CBG00133a.1   [unknown]
Transcript:CBG00133b.1 CBG00133b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00133a CBG00133a   [unknown]
CDS:CBG00133b CBG00133b   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00135503
WBVar00135504
WBVar00135505

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lin-2, TGGAGCTCATGGAGTTGGTCGACGACATATAAAGAACACGCTGATACATAGACATCCAAA, WBGene00023607   Expr1064639 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region