WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression analysiswas conducted using the DESeq R package (available from Bio-conductor). The DESeq analysis resulted in the determination of potential differentially expressed genes when compared between the DMH46 and N2 (wildtype) samples. The read counts for each sample were normalized for sequencing depth and distortion caused by highly differentially expressed genes.Then the negative bi nomial (NB) model was used to test the significance of differential expression between two genotypes.The differentially expressed genes were deemed significant if the FDR (False Discovery Rate) was less than 0.05, and the gene expression was above the 10th percentile, and showed greater than 2-fold change difference(overexpressed or underexpressed) between the conditions. Description  Transcripts that showed significantly increased expression in animals overexpression human amylin (driven by hsp-16.2).
Primary Identifier  WBPaper00056731:human-amylin_upregulated

0 Anatomy Terms

63 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000451 ceh-30 C33D12.7 Caenorhabditis elegans
WBGene00000650 col-74 ZK1248.2 Caenorhabditis elegans
WBGene00000782 cpr-2 F36D3.9 Caenorhabditis elegans
WBGene00000902 daf-6 F31F6.5 Caenorhabditis elegans
WBGene00001081 dpy-22 F47A4.2 Caenorhabditis elegans
WBGene00001182 egl-13 T22B7.1 Caenorhabditis elegans
WBGene00001477 fmo-2 K08C7.5 Caenorhabditis elegans
WBGene00001591 glc-1 F11A5.10 Caenorhabditis elegans
WBGene00002233 kqt-1 C25B8.1 Caenorhabditis elegans
WBGene00003558 nca-2 C27F2.2 Caenorhabditis elegans
WBGene00004106 pqn-15 C24A8.3 Caenorhabditis elegans
WBGene00006380 tab-1 F31E8.3 Caenorhabditis elegans
WBGene00006750 unc-10 T10A3.1 Caenorhabditis elegans
WBGene00007384 swt-3 C06G8.1 Caenorhabditis elegans
WBGene00008575 scl-24 F08E10.7 Caenorhabditis elegans
WBGene00008958 rif-1.2 F19H6.3 Caenorhabditis elegans
WBGene00009503 F37A8.5 F37A8.5 Caenorhabditis elegans
WBGene00009908 F49H6.5 F49H6.5 Caenorhabditis elegans
WBGene00009998 klf-2 F53F8.1 Caenorhabditis elegans
WBGene00011101 R07D5.2 R07D5.2 Caenorhabditis elegans
WBGene00012959 Y47H10A.3 Y47H10A.3 Caenorhabditis elegans
WBGene00013602 Y87G2A.16 Y87G2A.16 Caenorhabditis elegans
WBGene00013847 cls-3 ZC84.3 Caenorhabditis elegans
WBGene00013850 ZC84.7 ZC84.7 Caenorhabditis elegans
WBGene00013898 ZC443.3 ZC443.3 Caenorhabditis elegans
WBGene00015044 cyp-34A9 B0213.15 Caenorhabditis elegans
WBGene00016088 clec-266 C25B8.4 Caenorhabditis elegans
WBGene00016670 ilys-3 C45G7.3 Caenorhabditis elegans
WBGene00016886 fbxb-96 C52E2.7 Caenorhabditis elegans
WBGene00016953 C55C3.3 C55C3.3 Caenorhabditis elegans

0 Life Stages

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
HGNC:5329 Iapp IAPP Homo sapiens

0 Regulated By Molecule