WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023706 Gene Name  Cbr-bckd-1B
Sequence Name  ? CBG00294 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Transketolase-like, pyrimidine-binding domain; Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II; Transketolase, pyrimidine binding domain; Transketolase, C-terminal domain; and Thiamin diphosphate-binding fold. Is an ortholog of C. elegans bckd-1B. In C. elegans, bckd-1B is involved in positive regulation of fatty acid biosynthetic process and positive regulation of nematode larval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00294.1 CBG00294.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00294 CBG00294   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-173, TGGGGAACCCAAGTGCACGTGGCACTCGAAGCGGCTCAAATGGCAAAAGACAAGTTGAGC, WBGene00023706   Expr1062453 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region