WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00229088 Gene Name  Bma-ptp-3
Sequence Name  ? Bm8827 Organism  Brugia malayi
Automated Description  Is predicted to encode a protein with the following domains: Immunoglobulin; Immunoglobulin domain; Immunoglobulin I-set; Immunoglobulin subtype 2; Fibronectin type III domain; Immunoglobulin subtype; Immunoglobulin-like fold; Fibronectin type III superfamily; Immunoglobulin I-set domain; Immunoglobulin-like domain superfamily; and Fibronectin type III. Is an ortholog of C. elegans ptp-3. In C. elegans, ptp-3 is involved in several processes, including embryonic morphogenesis; nervous system development; and neuroblast migration. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Brugia malayi 6279

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Bm8827b.1 Bm8827b.1   [unknown]
Transcript:Bm8827a.1 Bm8827a.1   [unknown]
Transcript:Bm8827e.1 Bm8827e.1   [unknown]
Transcript:Bm8827d.1 Bm8827d.1   [unknown]
Transcript:Bm8827c.1 Bm8827c.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Bm8827d Bm8827d   [unknown]
CDS:Bm8827e Bm8827e   [unknown]
CDS:Bm8827a Bm8827a   [unknown]
CDS:Bm8827b Bm8827b   [unknown]
CDS:Bm8827c Bm8827c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly higher expression in L3 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L3_vs_Adult_Upregulated
  Transcripts that showed significantly decreased expression in male B. malayi 120 days after infecting gerbils, comparing to female B. malayi 120 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_M120_vs_F120
  Transcripts that showed significantly higher expression in L4 larva comparing to in adult. edgeR v3.28. FDR < 0.05, fold change > 2. WBPaper00061765:L4_vs_Adult_Upregulated
  Transcripts that showed significantly increased expression in male B. malayi 120 days after infecting gerbils, comparing to 30 days after infecting gerbils. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M120_vs_M30
  Transcripts that showed significantly increased expression in male B. malayi 30 days after infecting gerbils, comparing to L4 male B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:upregulated_M30_vs_L4
  Transcripts that showed significantly decreased expression in female B. malayi 30 days after infecting gerbils, comparing to L4 female B. malayi animals. EdgeR(v3.16.5), FDR < 0.05. WBPaper00051007:downregulated_F30_vs_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region