WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027002 Gene Name  Cbr-rpn-5
Sequence Name  ? CBG04294 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: 26S proteasome regulatory subunit RPN5, C-terminal domain; 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4; 26S proteasome regulatory subunit RPN5 C-terminal domain; Proteasome component (PCI) domain; Winged helix DNA-binding domain superfamily; PCI domain; Winged helix-like DNA-binding domain superfamily; and 26S Proteasome non-ATPase regulatory subunit 12. Is an ortholog of C. elegans rpn-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04294.1 CBG04294.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04294 CBG04294   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly decreased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rpn-5, CAATCAGGAATTGATTTCTTTCAAGGGAACCATTGTGGCTCAGTACGAGAAGTTGTTGAG, WBGene00027002   Expr1056709 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region