WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00099475 Gene Name  PPA09921
Sequence Name  ? PPA09921 Organism  Pristionchus pacificus
Automated Description  Enriched in intestine based on RNA-seq studies. Is predicted to encode a protein with the following domains: Laminin-type EGF domain; Immunoglobulin I-set; Laminin IV; Immunoglobulin-like fold; Immunoglobulin-like domain; Low-density lipoprotein (LDL) receptor class A repeat; Low-density lipoprotein receptor domain class A; EGF-like domain; Immunoglobulin domain; Laminin B (Domain IV); Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; LDL receptor-like superfamily; Laminin EGF domain; Laminin G domain; Immunoglobulin subtype; Immunoglobulin I-set domain; Growth factor receptor cysteine-rich domain superfamily; and Concanavalin A-like lectin/glucanase domain superfamily. Is an ortholog of C. elegans tag-297 and unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA09921.1 PPA09921.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA09921 PPA09921   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Pristionchus pacificus genes down regulated in the dauer versus dauer-exit worms. The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. WBPaper00041207:PP_dauer_down
  Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides. The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid). WBPaper00041472:Phosphorylated_protein
  P.pacificus genes enriched in intestine. Cuffdiff (version v2.0.1) WBPaper00049334:PE_intestine_enriched
Yeast culture: C.curvatus Transcripts that showed significantly decreased expression after fed with yeast culture C.curvatus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.curvatus_vs_OP50_downregulated
Yeast culture: C.albidus Transcripts that showed significantly increased expression after fed with yeast culture C.albidus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.albidus_vs_OP50_upregulated
Yeast culture: C.albidus Transcripts that showed significantly decreased expression after fed with yeast culture C.albidus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.albidus_vs_OP50_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region