WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00095695 Gene Name  Ppa-atrn-1
Sequence Name  ? PPA06141 Organism  Pristionchus pacificus
Automated Description  Is predicted to encode a protein with the following domains: EGF-like domain; Laminin-type EGF domain; CUB domain; Plexin repeat; Kelch motif; Spermadhesin, CUB domain superfamily; PSI domain; Laminin EGF domain; Kelch-type beta propeller; and Kelch repeat type 1. Is an ortholog of C. elegans atrn-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA06141.1 PPA06141.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA06141 PPA06141   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Differentially expressed genes between eud-1(tu1069) and PS312. Fold change > 2 and p-value < 0.05. WBPaper00061743:ppa-eud-1(tu1069)_regulated
  Pristionchus pacificus genes down regulated in the dauer versus dauer-exit worms. The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. WBPaper00041207:PP_dauer_down

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region