WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00261918 Gene Name  SRAE_2000171200
Sequence Name  ? SRAE_2000171200 Organism  Strongyloides ratti
Automated Description  Is predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; Leucine-rich repeat; Leucine rich repeat 4; Leucine rich repeat; Leucine Rich repeats (2 copies); and Leucine-rich repeat domain superfamily. Is an ortholog of C. elegans sds-22. In C. elegans, sds-22 is involved in negative regulation of centriole replication. Biotype  SO:0001217
Genetic Position  :±
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_2000171200.1 SRAE_2000171200.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_2000171200 SRAE_2000171200   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats). Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:down_infective-L3_vs_parasitic_mRNA
parasitic vs free-living. Transcripts that showed significantly decreased expression at infective third-stage larva stage, comparing to free living female stage. Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:down_infective-L3_vs_free-living_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region