WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00262092 Gene Name  SRAE_2000188500
Sequence Name  ? SRAE_2000188500 Organism  Strongyloides ratti
Automated Description  Is predicted to encode a protein with the following domains: HMG-box domain; HMG (high mobility group) box; High mobility group box domain; and High mobility group box domain superfamily. Is an ortholog of C. elegans hmg-1.2. In C. elegans, hmg-1.2 is involved in several processes, including Wnt signaling pathway; positive regulation of transcription by RNA polymerase II; and vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_2000188500.1 SRAE_2000188500.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_2000188500 SRAE_2000188500   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Proteins that showed significantly decreased expression at parasitic female stage (collected from S. ratti-infected rats), comparing to free living female stage. Significant differences were analyzed statistically by ANOVA. Q-values are adjusted P values and were calculated by Progenesis based on an optimized false discovery (FDR) approach. A protein was considered to be differentially expressed if q < 0.05. WBPaper00050919:down_parasitic_vs_free-living_protein

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region