WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00258645 Gene Name  SRAE_1000203300
Sequence Name  ? SRAE_1000203300 Organism  Strongyloides ratti
Automated Description  Is predicted to encode a protein with the following domains: Rab3 GTPase-activating protein catalytic subunit and Rab3GAP catalytic subunit, conserved domain. Is an ortholog of C. elegans rbg-1. In C. elegans, rbg-1 is involved in amyloid fibril formation; autophagy; and positive regulation of autophagosome assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Strongyloides ratti 34506

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:SRAE_1000203300.1 SRAE_1000203300.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:SRAE_1000203300 SRAE_1000203300   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
parasitic vs free-living. Transcripts that showed significantly increased expression at infective third-stage larva stage, comparing to parasitic female stage (collected from S. ratti-infected rats). Differentially expressed genes in all pairwise comparisons (parasitic vs. free-living; parasitic vs. iL3; and iL3 vs. free-living) were determined for S.ratti and S.stercoralis using the R (version 3.1.2) package edgeR version 3.6.8. Genes with less than one count per million reads were excluded. Genes were considered to be differentially expressed if the false discovery rate (FDR) was <= 0.001 and the fold change was >= 2. WBPaper00050919:up_infective-L3_vs_parasitic_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region