WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00109420 Gene Name  Ppa-rpn-6.1
Sequence Name  ? PPA19866 Organism  Pristionchus pacificus
Automated Description  Is predicted to encode a protein with the following domains: 26S proteasome regulatory subunit Rpn6, N-terminal; 26S proteasome regulatory subunit RPN6 N-terminal domain; Proteasome component (PCI) domain; Winged helix DNA-binding domain superfamily; and PCI domain. Is an ortholog of C. elegans rpn-6.1. In C. elegans, rpn-6.1 is involved in determination of adult lifespan; proteasome assembly; and ubiquitin-dependent protein catabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA19866.1 PPA19866.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA19866 PPA19866   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Germline ablation Genes that showed differential expression in the comparision of germline-ablated animals fed on E. coli OP50 versus un-ablated animals fed E. coli OP50. Differential expression was calculated by empirical Bayes method using the eBayes function, and control of FDR was employed as the multiple testing correction. Authors used cutoff of absolute log2 fold change greater than or equal to 1.5 AND p_value less than or equal to 0.05 to call differentially expressed genes. WBPaper00041466:PP_germline-ablation_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region