WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00105614 Gene Name  PPA16060
Sequence Name  ? PPA16060 Organism  Pristionchus pacificus
Automated Description  Is an ortholog of C. elegans F28B4.3 and irg-7. Biotype  SO:0001217
Genetic Position  :±
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA16060c.1 PPA16060c.1   [unknown]
Transcript:PPA16060d.1 PPA16060d.1   [unknown]
Transcript:PPA16060a.1 PPA16060a.1   [unknown]
Transcript:PPA16060b.1 PPA16060b.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA16060d PPA16060d   [unknown]
CDS:PPA16060b PPA16060b   [unknown]
CDS:PPA16060c PPA16060c   [unknown]
CDS:PPA16060a PPA16060a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Pristionchus pacificus genes up regulated in the dauer versus dauer-exit worms. The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. WBPaper00041207:PP_dauer_up
  Pristionchus pacificus genes down regulated in the dauer versus dauer-exit worms. The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. WBPaper00041207:PP_dauer_down

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region