WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036730 Gene Name  CBG16936
Sequence Name  ? CBG16936 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Sushi/SCR/CCP superfamily; Sushi/SCR/CCP domain; and Sushi repeat (SCR repeat). Is an ortholog of C. elegans cfh-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

14 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16936b.1 CBG16936b.1   [unknown]
Transcript:CBG16936a.1 CBG16936a.1   [unknown]
Transcript:CBG16936e.1 CBG16936e.1   [unknown]
Transcript:CBG16936d.1 CBG16936d.1   [unknown]
Transcript:CBG16936c.1 CBG16936c.1   [unknown]
Transcript:CBG16936g.1 CBG16936g.1   [unknown]
Transcript:CBG16936f.1 CBG16936f.1   [unknown]
Transcript:CBG16936i.1 CBG16936i.1   [unknown]
Transcript:CBG16936h.1 CBG16936h.1   [unknown]
Transcript:CBG16936k.1 CBG16936k.1   [unknown]
Transcript:CBG16936j.1 CBG16936j.1   [unknown]
Transcript:CBG16936m.1 CBG16936m.1   [unknown]
Transcript:CBG16936l.1 CBG16936l.1   [unknown]
Transcript:CBG16936n.1 CBG16936n.1   [unknown]
 

Other

14 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16936l CBG16936l   [unknown]
CDS:CBG16936k CBG16936k   [unknown]
CDS:CBG16936n CBG16936n   [unknown]
CDS:CBG16936m CBG16936m   [unknown]
CDS:CBG16936h CBG16936h   [unknown]
CDS:CBG16936g CBG16936g   [unknown]
CDS:CBG16936j CBG16936j   [unknown]
CDS:CBG16936i CBG16936i   [unknown]
CDS:CBG16936d CBG16936d   [unknown]
CDS:CBG16936c CBG16936c   [unknown]
CDS:CBG16936f CBG16936f   [unknown]
CDS:CBG16936e CBG16936e   [unknown]
CDS:CBG16936b CBG16936b   [unknown]
CDS:CBG16936a CBG16936a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00021722
WBVar00021692
WBVar00021727
WBVar00021697
WBVar00021732
WBVar00021702
WBVar00021737
WBVar00021707
WBVar00021742
WBVar00021712
WBVar00021747
WBVar00021717
WBVar00021687

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16936, ACGTCGACATGCCAAAACGGCTTGTTCACTGAAATTACAGCTCAGTGTACTAGGATTTGA, WBGene00036730   Expr1064496 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16937, CGCGGTTACTGGAATTGCTACTCTACAGTGTCAAAATGGACAATGGGAACCACAAAGTGG, WBGene00036731   Expr1064822 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region