WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038376 Gene Name  CBG19104
Sequence Name  ? CBG19104 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: Leucine-rich repeat domain superfamily. Is an ortholog of C. elegans C13F10.6. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19104.1 CBG19104.1   [unknown]
Transcript:CBG19104.2 CBG19104.2   [unknown]
Transcript:CBG19104.3 CBG19104.3   [unknown]
Transcript:CBG19104.4 CBG19104.4   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19104 CBG19104   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00127208
WBVar00127207
WBVar00127206
WBVar00127205
WBVar00127209
WBVar00127200
WBVar00127204
WBVar00127203
WBVar00127202
WBVar00127201
WBVar00127199

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG27167, CAATGACAATTGCGAGAGGTTGGCTGGAAGTATGACCGCTGAGCATTTCGAAAGAGACAT, WBGene00088581   Expr1064799 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG19104, GAACAGTTGCAAACTGACTTCAGCCTCTATCGATATTCTTGTGTCATCGACATTCGAAAC, WBGene00038376   Expr1069933 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region