WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035968 Gene Name  Cbr-dnj-27
Sequence Name  ? CBG15846 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Thioredoxin; Chaperone J-domain superfamily; DnaJ domain; Thioredoxin-like superfamily; and Thioredoxin domain. Is an ortholog of C. elegans dnj-27. In C. elegans, dnj-27 is involved in IRE1-mediated unfolded protein response. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG15846.1 CBG15846.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG15846 CBG15846   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00123330
WBVar00123332
WBVar00123331
WBVar00123323
WBVar00123322
WBVar00123325
WBVar00123324
WBVar00123327
WBVar00123326
WBVar00123329
WBVar00123328
WBVar00123321
WBVar00123320
WBVar00123316
WBVar00123318
WBVar00123317
WBVar00123319
WBVar00123334
WBVar00123333

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dnj-27, GACAGGATTCGCAGGGTTACGGTATCGGAACACAGCATAAGGAGCAGTTTATACAGATTG, WBGene00035968   Expr1061729 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region