WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036299 Gene Name  Cbr-hda-4
Sequence Name  ? CBG16328 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Ureohydrolase domain superfamily; Histone deacetylase family; Histone deacetylase domain; and Histone deacetylase domain superfamily. Is an ortholog of C. elegans hda-4. In C. elegans, hda-4 is involved in negative regulation of transcription by RNA polymerase II; receptor guanylyl cyclase signaling pathway; and regulation of neuron differentiation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16328.1 CBG16328.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16328 CBG16328   [unknown]

0 RNAi Result

17 Allele

Public Name
WBVar00123773
WBVar00123770
WBVar00123772
WBVar00123771
WBVar00123763
WBVar00123765
WBVar00123764
WBVar00123767
WBVar00123766
WBVar00123769
WBVar00123768
WBVar00024634
WBVar00024639
WBVar00024644
WBVar00024649
WBVar00024654
WBVar00024629

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hda-4, TTGTGCACGGATTCGTTGGAGAACTTGCCGAATCAAAGCGCACTGGAGACACTACAAAAG, WBGene00036299   Expr1053202 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region