WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035292 Gene Name  Cbr-npp-7
Sequence Name  ? CBG14918 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Nuclear pore complex protein; Zinc finger, RanBP2-type; and Zn-finger in Ran binding protein and others. Is an ortholog of C. elegans npp-7. In C. elegans, npp-7 is involved in several processes, including determination of adult lifespan; nucleus organization; and regulation of exit from mitosis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14918.1 CBG14918.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14918 CBG14918   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00017887
WBVar00017882
WBVar00017877
WBVar00017872
WBVar00017867
WBVar00017862
WBVar00017857
WBVar00017852
WBVar00017847
WBVar00017842
WBVar00017837

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-npp-7, AACAATTTGTCAGTGCCACAGCCGCCTGTTCCTGGAAGTATGGATAATGCATTTGCTTAT, WBGene00035292   Expr1066864 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region