WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035249 Gene Name  Cbr-hot-5
Sequence Name  ? CBG14866 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Caenorhabditis elegans ly-6-related protein and Caenorhabditis elegans ly-6-related. Is an ortholog of C. elegans hot-5. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14866.1 CBG14866.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14866 CBG14866   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00121809
WBVar00121800
WBVar00121801
WBVar00121802
WBVar00121803
WBVar00121804
WBVar00121805
WBVar00121806
WBVar00121807
WBVar00121808
WBVar00121810
WBVar00121811
WBVar00121812
WBVar00121813
WBVar00121814
WBVar00121815
WBVar00121816
WBVar00121817
WBVar00121798
WBVar00121799

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-hot-5, AAATAGTGCAAGTGTGCTCCTGTGACAAAGACGGATGTAATTTCGACTCGATCAACGATT, WBGene00035249   Expr1052250 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region