WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00035011 Gene Name  Cbr-add-1
Sequence Name  ? CBG14555 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Class II Aldolase and Adducin N-terminal domain; Class II aldolase/adducin N-terminal domain superfamily; and Class II aldolase/adducin N-terminal. Is an ortholog of C. elegans add-1. In C. elegans, add-1 is involved in actin filament bundle organization; memory; and receptor localization to synapse. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG14555c.1 CBG14555c.1   [unknown]
Transcript:CBG14555b.1 CBG14555b.1   [unknown]
Transcript:CBG14555a.1 CBG14555a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG14555c CBG14555c   [unknown]
CDS:CBG14555b CBG14555b   [unknown]
CDS:CBG14555a CBG14555a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00017597
WBVar00017622
WBVar00017612
WBVar00017617
WBVar00017602
WBVar00017607
WBVar00017657
WBVar00017652
WBVar00017647
WBVar00017642
WBVar00017637
WBVar00017632
WBVar00017627

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-add-1, TCACGCTCAAGTTTATCAACAAATCTATGCACCGAACCCATTCTCCATTGAAACCGATGA, WBGene00035011   Expr1063253 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region