WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028943 Gene Name  CBG06703
Sequence Name  ? CBG06703 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Protein of unknown function DUF713 and Protein of unknown function (DUF713). Is an ortholog of C. elegans Y2H9A.4. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06703c.1 CBG06703c.1   [unknown]
Transcript:CBG06703b.1 CBG06703b.1   [unknown]
Transcript:CBG06703a.1 CBG06703a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06703c CBG06703c   [unknown]
CDS:CBG06703b CBG06703b   [unknown]
CDS:CBG06703a CBG06703a   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00020874
WBVar00020894
WBVar00020879
WBVar00020864
WBVar00020884
WBVar00020869
WBVar00020889

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Virus infection: Santeuil infected at L3 larva stage for 12 hours. Transcripts that showed signicantly increased expression after Santeuil virus infection to C. briggsae strain JU1264. edgeR, FDR < 0.05. WBPaper00051137:Santeuil-virus_upregulated_JU1264

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG06704, TCTGTGGCTGTTCAACGCAGTGCTTCTCGCAGAAGAGCATCCAAGGTCGTTGTTGCTTAA, WBGene00028944   Expr1065397 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG06703, CTCAGGAGGTTCACTTTTTTTCAGAAATCAATCAGTGTGCAAGGAGAAAAATGCGATGCC, WBGene00028943   Expr1066195 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region